Practical Course in Bioinformatics / Software lab
Location: MTZ Seminar Room, Pauwelstr, 19; 3rd Floor, Corridor B room 3.04.
Dates: Monday 9:30-12:30 (starting 18.04.2016)
Prerequisite (desirable): Introduction to Bioinformatics
Credits: 7 (10 with extra work)
Lecturers: Ivan G. Costa
Evaluation: 20% protoypes / 60% final project / 20% presentation
Campus Description: ￼ Bioinformatik Praktikum
We will cover the usage and development of bioinformatic methods for analysis of next generation sequencing data. The lab task will be based on the implementation of a full bioinformatics pipeline including: integration of low-level analysis tools (i.e. short sequencing aligner), development of a method for high level analysis (i.e. detection of Single-nucleotide polymorphism) and generation of a biology friendly interface for simple operations (web interface). We will provide real data as disease vs. normal individuals as case studies to be analysed by students.
18.04.2016 – Introduction to Next Generation Sequecing Problems
25.04.2016 – Practical Example – NGS of Regulatory Genomics Data | Installation & Practical Script
02.05.2016 – Introduction to RGT, Genomic File Formats | Installation & Practical Scripts
09.05.2016 – Project Description
17.05.2016 to 11.07.2016 – Project Development (Weekly)
04.07.2016 – Final Presentation: Algorithms/Optimization Group | Database/Interface Group
Online course from EBI. Only these lectures are of direct interest: