We invite applicants for a PhD position in integrative analysis of single cell transcriptomics and open chromatin data to dissect fibrosis on kidney diseases. The candidate will develop bioinformatic methods for tracking temporal changes of single cells and methods to …
Ph.D. position (m/f/d) in Single Cell Bioinformatics Read more »
We invite applicants for a PhD position in computational methods to dissect DNA methylation changes and their impact in regulatory features of cells upon aging in humans. The candidate will develop bioinformatic methods for detection of age associated DNA methtylation …
Ph.D. position (m/f/d) in Epigenomics Bioinformatics Read more »
The work on open chromatin estimation and transcription factor activity in single cell ATAC-seq has been selected for a short talk at the keystone meeting: Single Cell Biology: Pushing New Frontiers in the Life Sciences https://www.keystonesymposia.org/ks/Online/Events/2020F1/Details.aspx?EventKey=2020F We are looking forward …
We are looking for an experienced bioinformatician for helping the creation a spatial map of fibrosis. The candidate will develop bioinformatic methods for tracking temporal changes of single cells and integrative analysis of scRNA-seq, scATAC-seq and spatial information. This position …
The Federal Ministry of Education and Research (BMBF) is funding the research project „Spatial Mapping of Single Cells in Fibrotic Disease“, FibroMap for short, of the Uniklinik RWTH Aachen with 3.3 million euros. The Aachen scientists Prof. Dr. med. Dr. …
Funding of the BMBF Consortia / Spatial Map of Fibrosis Read more »
Imputation and footprinting for single cell ATAC-seq. New manuscript & software release! scOpen deals with massive sparsity and dropout events of single cell ATAC-seq. Use of scOpen improves clustering, inference of regulators and chromatin conformation. scHINT dissect regulatory & temporal …
Imputation and footprinting for single cell ATAC-seq. New manuscript & software release! Read more »
Collaborative work with Krenkel and Tacke dissect changes in immune cells of mice subjected to high fat / high sugar diets.
Our paper on HINT-ATAC is finally out in Genome Biology!
A paper describing TDF- a framework for detection of triple helix forming RNAs – is finally out in NAR! Moreover with Grummt Lab, we have performed computational analysis of TripleRNA-seq and TriplexDNA-seq; two novel protocols for returning DNA/RNA molecules forming …
