.. RGT documentation master file, created by
   sphinx-quickstart on Wed Jan  6 15:14:11 2016.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to RGT's documentation!
===============================

Contents:

.. toctree::
   :maxdepth: 2

.. automodule:: GenomicRegion
    :members:

.. automodule:: GenomicRegionSet
    :members:

.. automodule:: CoverageSet
    :members:

.. automodule:: GenomicVariant
    :members:

.. automodule:: GenomicVariantSet
    :members:

.. automodule:: AnnotationSet
    :members:

.. automodule:: ExperimentalMatrix
    :members:

.. automodule:: GeneSet
    :members:

.. automodule:: SequenceSet
    :members:

.. automodule:: Util
    :members:

.. automodule:: MotifSet
    :members:

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`